Use pdflatex, alignment.

latexmkrc

+#!/usr/bin/env perl
+$pdf_mode = 1;
+$pdflatex = "pdflatex -file-line-error -interaction=nonstopmode %O %S";

thesis.tex

@@ -31,7 +31,6 @@
 
 \usepackage{graphicx}
 
-
 \usepackage{blindtext}
 
 %\usepackage{tudscrsupervisor} % if you want to copy the sources of the task description into the thesis